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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00113.1.g00560.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 27388.3 Da PI: 6.2369 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 81 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++ +g Zpz_sc00113.1.g00560.1.sm.mk 81 PSYRGVRRRS-WGVWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAVKG 131 57*****887.**********843...6**********************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-12 | 81 | 131 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.57E-28 | 81 | 141 | No hit | No description |
PROSITE profile | PS51032 | 23.406 | 82 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-35 | 82 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-20 | 82 | 140 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 82 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MESDAIHAPA TPSSSDSGSC VINGAQEQSK NGKPSVKHRK RTRAASPSGP AAAGARAPEA 60 VDDEHGEKGS SRSKRAAGRH PSYRGVRRRS WGVWVSEIRE PRKKSRIWLG TFPTAEMAAR 120 AHDVAALAVK GRAAHLNFPH LAHELPRPAS TSPADIQAAA AVAAAAAADT AADPCESSPA 180 AEASSSSSAA FSEDATAAGR VEENALFDLP DLLLDLQNGL WLSSLWAAAP AAAEEYDVVG 240 LHEPLLWADG QCWLDAAAPG QLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3gcc_A | 3e-14 | 76 | 139 | 1 | 63 | ATERF1 |
2gcc_A | 3e-14 | 76 | 139 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646010.1 | 4e-81 | PREDICTED: ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 1e-48 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A060D1W7 | 4e-81 | A0A060D1W7_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM5G842961_P01 | 1e-80 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-20 | ERF family protein |